Source code for tcutility.results

"""
This module provides basic and general information about calculations done using AMS given a calculation directory.
This includes information about the engine used (ADF, DFTB, BAND, ...), general information such as timings, files, status of the calculation, etc.
This information is used in further analysis programs.

"""

from typing import Union

from . import result

Result = result.Result

import os  # noqa: E402
import pathlib as pl  # noqa: E402

from .. import slurm  # noqa: E402
from . import adf, ams, cache, dftb, orca, xtb  # noqa: E402


[docs] def get_info(calc_dir: str): try: return ams.get_ams_info(calc_dir) except: # noqa pass try: return orca.get_info(calc_dir) except: # noqa pass try: return xtb.get_info(calc_dir) except: # noqa pass res = Result() # if we cannot correctly read the info, we return some generic result object # before that, we check the job status by checking slurm if slurm.workdir_info(os.path.abspath(calc_dir)): res.engine = "unknown" state = slurm.workdir_info(os.path.abspath(calc_dir)).statuscode state_name = {"CG": "COMPLETING", "CF": "CONFIGURING", "PD": "PENDING", "R": "RUNNING"}.get(state, "UNKNOWN") res.status.fatal = False res.status.name = state_name res.status.code = state res.status.reasons = [] else: res.engine = "unknown" res.status.fatal = True res.status.name = "UNKNOWN" res.status.code = "U" res.status.reasons = [] # give a little more specific information about the error if not os.path.exists(calc_dir): res.status.reasons.append(f"Could not find folder {calc_dir}") elif not os.path.isdir(calc_dir): res.status.reasons.append(f"Path {calc_dir} is not a directory") else: res.status.reasons.append(f"Could not read calculation in {calc_dir}") return res
[docs] def read(calc_dir: Union[str, pl.Path]) -> Result: """Master function for reading data from calculations. It reads general information as well as engine-specific information. Args: calc_dir: path pointing to the working directory for the desired calculation Returns: dictionary containing information about the calculation """ calc_dir = str(calc_dir) if isinstance(calc_dir, pl.Path) else calc_dir ret = Result() ret.update(get_info(calc_dir)) if ret.engine == "adf": try: ret.adf = adf.get_calc_settings(ret) except: # noqa ret.adf = None try: ret.properties = adf.get_properties(ret) except: # noqa ret.properties = None try: ret.level = adf.get_level_of_theory(ret) except: # noqa ret.level = None elif ret.engine == "dftb": ret.dftb = dftb.get_calc_settings(ret) ret.properties = dftb.get_properties(ret) elif ret.engine == "xtb": # ret.xtb = xtb.get_calc_settings(ret) ret.properties = xtb.get_properties(ret) elif ret.engine == "orca": try: ret.orca = orca.get_calc_settings(ret) except: # noqa ret.orca = None try: ret.properties = orca.get_properties(ret) except: # noqa ret.properties = None # unload cached KFReaders associated with this calc_dir to_delete = [key for key in cache._cache if key.startswith(os.path.abspath(calc_dir))] [cache.unload(key) for key in to_delete] return ret
if __name__ == "__main__": res = read("/Users/yumanhordijk/Library/CloudStorage/OneDrive-VrijeUniversiteitAmsterdam/RadicalAdditionBenchmark/data/abinitio/P_C2H2_NH2/OPT_pVTZ") print(res.molecule)